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Medals | | Club | I | II | III | Competitors |
|---|
| 1. | Audentese Sk | 8 | 4 | 7 | 25 |
| 2. | Sk Do | 5 | 5 | 10 | 29 |
| 3. | Aitado | 5 | 5 | 2 | 25 |
| 4. | Budolinn Judokool | 3 | 2 | 5 | 17 |
| 5. | Ookami | 3 | 1 | 4 | 11 |
| 6. | Kohtla-Järve Spordiselts Kalev | 2 | 2 | 0 | 9 |
| 7. | Kibuvits | 1 | 2 | 3 | 14 |
| 8. | Energia/Buffen-do | 1 | 2 | 2 | 11 |
| 9. | Barra | 1 | 0 | 0 | 1 |
| 10. | Dokyo | 0 | 2 | 1 | 6 |
| 11. | Samurai | 0 | 1 | 4 | 16 |
| 12. | Võru Judoklubi Rei | 0 | 1 | 2 | 8 |
| 13. | Sk Zen | 0 | 1 | 0 | 4 |
| 13. | Toni Judokool | 0 | 1 | 0 | 5 |
| 15. | Bushinkan | 0 | 0 | 1 | 5 |
| 15. | Dodze | 0 | 0 | 1 | 6 |
| 15. | M-Dojo | 0 | 0 | 1 | 2 |
| 15. | Mikata | 0 | 0 | 1 | 2 |
| 15. | Sakura | 0 | 0 | 1 | 1 |
| 15. | Sk Altia | 0 | 0 | 1 | 4 |
| 21. | Dvigatel | 0 | 0 | 0 | 5 |
| 21. | Rapla Judoklubi | 0 | 0 | 0 | 1 |
| 21. | Sk Byakko | 0 | 0 | 0 | 2 |
| 21. | Taifu | 0 | 0 | 0 | 6 |
| 21. | Viru Judo | 0 | 0 | 0 | 1 |
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