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Medals | | Club | I | II | III | Competitors |
|---|
| 1. | Judoakadeemia | 12 | 5 | 5 | 33 |
| 2. | Olümpiko | 4 | 5 | 8 | 27 |
| 3. | Spordiklubi Barra | 3 | 3 | 1 | 17 |
| 4. | Ookami | 2 | 2 | 4 | 24 |
| 5. | Aitado | 2 | 1 | 1 | 9 |
| 6. | M-Dojo | 1 | 1 | 0 | 6 |
| 7. | Atari | 1 | 0 | 1 | 7 |
| 8. | Tartu Valla Spordiklubi | 1 | 0 | 0 | 2 |
| 9. | Judoklubi Samurai | 0 | 2 | 1 | 16 |
| 9. | Kibuvits judo | 0 | 2 | 1 | 7 |
| 11. | Judoklubi Dokyo | 0 | 1 | 3 | 10 |
| 12. | Kohtla-Järve Kalev | 0 | 1 | 2 | 6 |
| 13. | Budolinn | 0 | 1 | 0 | 8 |
| 14. | Energia/Buffen-do | 0 | 0 | 3 | 7 |
| 14. | Nõmme Spordiklubi | 0 | 0 | 3 | 9 |
| 16. | Spordiklubi Altia | 0 | 0 | 2 | 7 |
| 17. | Sk Zen | 0 | 0 | 1 | 2 |
| 17. | Tartu DO | 0 | 0 | 1 | 1 |
| 17. | Toni judokool EST MTÜ | 0 | 0 | 1 | 4 |
| 20. | Mikata JUdokool | 0 | 0 | 0 | 1 |
| 20. | Rapla Judoklubi | 0 | 0 | 0 | 2 |
| 20. | SK Byakko | 0 | 0 | 0 | 2 |
| 20. | sk Dodze | 0 | 0 | 0 | 2 |
| 20. | SK Taifu / Viljandi SK | 0 | 0 | 0 | 6 |
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